Every since the first file was written to a floppy disk drive using DOS, physical file fragmentation has been a problem. Essentially, when the OS writes a file to a disk subsystem, and if contiguous clusters are not available, they are written elsewhere on disk. So when a file is stored on disk in a non-contiguous manner on a disk subsystem, the file is considered to be physically fragmented. Physical file fragmentation can contribute to an additional load on your I/O subsystem and reduce performance because the disks have to work harder to read and write data. This is because the heads on disk drive have to randomly jump around to different physical locations on the disk to find all of the data, instead of reading and writing the data sequentially, as when the data is contiguous.

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